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Titlebook: Computational Methods in Systems Biology; 13th International C Olivier Roux,Jérémie Bourdon Conference proceedings 2015 Springer Internatio

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Alexandre Dolgui,Alain Bernard,David Romeroith separated rate constants can be described by deterministic, acyclic automata with a number of states that is inferior to the number of biochemical species. For nonlinear pathways, we propose a general approach to approximate their dynamics by finite state machines working on the metastable state
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https://doi.org/10.1007/978-3-030-85906-0obial activity of synthetic and natural peptides where Quantitative Structure-Activity Relationship methodologies are widely used. Traditionally, works focused on designing descriptors for sequences to yield better correlations with the biological activity and improve predictors performance. Albeit
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Hyungjoon Yang,Je-Hun Lee,Hyun-Jung Kimtion, comparatively little work has been done on integrated systems that combine all of these aspects. This paper presents an active learning system, “Huginn”, that integrates experiment design and model revision in order to automate scientific reasoning about Metabolic Network Models. We have valid
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https://doi.org/10.1007/978-3-030-85914-5 nets. The kinetics of reactions need to be described only partially, so that the language can be used to model the regulation of metabolic networks. We present a qualitative reasoning method based on abstract interpretation of the steady state semantics of reaction networks modeled in our language.
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Hongyuan Luo,Mahjoub Dridi,Olivier Grunderarned from a prior knowledge network structure and multiplex phosphoproteomics data. However, most efficient and scalable training methods focus on the comparison of two time-points and assume that the system has reached an early steady state. In this paper, we generalize such a learning procedure t
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Alexandre Dolgui,Alain Bernard,David Romerol that performs . parameter set synthesis for . (ODE) biological models expressed in the . (SBML) given a desired behaviour expressed by time-series data. Three key features of . are: (1) . computes parameter intervals, not just single values; (2) for the identified intervals the model is formally g
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https://doi.org/10.1007/978-3-319-23401-4biological networks; computational biology; discrete models; model checking; simulation and modeling; app
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