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Titlebook: Computational Methods in Systems Biology; 13th International C Olivier Roux,Jérémie Bourdon Conference proceedings 2015 Springer Internatio

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Alexandre Dolgui,Alain Bernard,David Romeroposite signs in the differential equations of each dynamic variable. In algebraic geometry, tropical equilibrations are tantamount to tropical prevarieties, that are finite intersections of tropical hypersurfaces.
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Symbolic Dynamics of Biochemical Pathways as Finite States Machinesposite signs in the differential equations of each dynamic variable. In algebraic geometry, tropical equilibrations are tantamount to tropical prevarieties, that are finite intersections of tropical hypersurfaces.
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Boolean Network Identification from Multiplex Time Series Dataace. Based on this condition, we use a declarative programming approach (Answer Set Programming) to compute an over-approximation of the set of Boolean networks which fit best with experimental data. Combined with model-checking approaches, we end up with a global learning algorithm and compare it to learning approaches based on static data.
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A Genetically Modified Hoare Logic that Identifies the Parameters of a Gene Networkd on Hoare logic and weakest preconditions (a la Dijkstra) that generates constraints on the parameter values: Once proper specifications are extracted from biological traces, they play a role similar to programs in the classical Hoare logic. We firstly remind the discrete modelling for genetic netw
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SReach: A Probabilistic Bounded Delta-Reachability Analyzer for Stochastic Hybrid Systemss. The first one is (nonlinear) hybrid automata with parametric uncertainty. The second one is probabilistic hybrid automata with additional randomness for both transition probabilities and variable resets. Standard approaches to reachability problems for linear hybrid systems require numerical solu
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