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Titlebook: Comparative Genomics; Volume 2 Nicholas H. Bergman Book 2007 Humana Press 2007 DNA.Evolution.Genotyp.Microarray.Nucleotide.SNP.Single Nucle

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Analysis of Genome Rearrangement by Block-Interchanges
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Computational Prediction of Domain Interactionsding, and structural features but also molecular adapters, which mediate the physical interactions between proteins or proteins with other molecules. In addition, two conserved domains can be linked not by physical contact but by a common function like forming a binding pocket..Although a wealth of
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Inference of Gene Function Based on Gene Fusion Events“guilt by association.” It is assumed that two proteins, which are found to be transcribed by a single transcript in one (or several) genomes are likely to be functionally linked, for example by acting in a same metabolic pathway or by forming a multiprotein complex. This method is of particular int
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InterPro and InterProScannctional genomics and proteomics technologies for large-scale protein function prediction. However, functional classification is also important for the bench scientist wanting to analyze single or small sets of proteins, or even a single genome. A number of tools are available for sequence classific
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Visualization of Syntenic Relationships With SynBrowsehe genomic sequences of the considered species. Sequence similarities detected in this way often require manual curation to finally reveal the—in many cases—hidden syntenies. The open source software SynBrowse provides a convenient interface to visualize syntenies on a genomic scale. SynBrowse is ba
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