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Titlebook: Algorithmic Bioprocesses; Anne Condon,David Harel,Erik Winfree Book 2009 Springer-Verlag Berlin Heidelberg 2009 Algorithmic bioprocesses.A

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Fang Qi,Xing Chang,Zhe Tang,Wenbo Wanging DNA replication, subsequences of a strand of DNA may be copied several times (resulting in duplications) or skipped (resulting in repeat-deletions). As formal language operations, iterated duplication and repeat-deletion of words and languages have been well studied in the literature. However, l
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Fang Qi,Xing Chang,Zhe Tang,Wenbo Wangmethods based on stochastic context-free grammars (SCFGs) have been developed for modeling and analysing functional RNA sequences. These grammatical methods have succeeded in modeling typical secondary structures of RNAs and are used for structural alignments of RNA sequences. Such stochastic models
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https://doi.org/10.1007/978-3-662-04892-4sed on splicing, and have a fixed begin and end product. The main difference is the type of splicing operations used to obtain the end product from the begin product. In this overview paper, we show how the concept of breakpoint graph, known from the theory of sorting by reversal, can be used in the
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Dependability of Engineering Systems a formal model, TGR has been investigated both as a realistic model for genome rearrangement in ciliates and, due to interest in the potential of ciliates as “in vivo computers”, in terms of its computational power. TGR was put forward as a biological hypothesis that certain types of DNA rearrangem
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Stochastic Processes and Models,ry has been involved in the assembly and manipulation of designed oligonucleotides in order to pursue studies in genetic recombination and nanofabrication. We have constructed a large number of unusual branched DNA motifs used to build a variety of DNA objects, lattices, and nanomechanical devices.
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Lecture Notes in Mechanical EngineeringGrzegorz for fostering this remarkably interdisciplinary community which has provided me with so much interest and enjoyment..The theme of this symposium is ‘algorithmic bioprocesses’: this paper is concerned with the creation of artificial structures by algorithmic assembly of a biomolecule, DNA. I
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