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Titlebook: Algorithmic Bioprocesses; Anne Condon,David Harel,Erik Winfree Book 2009 Springer-Verlag Berlin Heidelberg 2009 Algorithmic bioprocesses.A

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Grzegorz Rozenberg: A Magical Scientist and Brothernd such good results in so numerous and diverse areas of science. This is why I have called him a “magical scientist.” He is also a very interdisciplinary scientist. In some sense this is due to his educational background. His first degree was in electronics engineering, the second a master’s in com
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Information Content of Sets of Biological Sequences Revisited amino acid to occur within columns of the aligned sequences and to combine these values through an “entropy” function whose minimum corresponds to absence of information, that is, to the case where each amino acid has the same probability to occur. Another alternative is to construct a distance tre
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Sequence and Structural Analyses for Functional Non-coding RNAsmethods based on stochastic context-free grammars (SCFGs) have been developed for modeling and analysing functional RNA sequences. These grammatical methods have succeeded in modeling typical secondary structures of RNAs and are used for structural alignments of RNA sequences. Such stochastic models
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Reality-and-Desire in Ciliatessed on splicing, and have a fixed begin and end product. The main difference is the type of splicing operations used to obtain the end product from the begin product. In this overview paper, we show how the concept of breakpoint graph, known from the theory of sorting by reversal, can be used in the
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Template-Guided Recombination: From Theory to Laboratory a formal model, TGR has been investigated both as a realistic model for genome rearrangement in ciliates and, due to interest in the potential of ciliates as “in vivo computers”, in terms of its computational power. TGR was put forward as a biological hypothesis that certain types of DNA rearrangem
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DNA Cages with Icosahedral Symmetry in Bionanotechnologys met twice in opposite directions by the DNA strand(s), and vertex junctions are realized by a set of admissible junction types. As nanocontainers for cargo storage and delivery, the icosidodecahedral cages are of special interest because they have the largest volume per surface ratio of all cages
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