Titlebook: RNA Design; Methods and Protocol Alexander Churkin,Danny Barash Book 2025 The Editor(s) (if applicable) and The Author(s), under exclusive

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SHAPE Probing to Screen Computationally Designed RNA,esign pipelines is based on trial and error strategies. The fast progression of such algorithms requires assaying the properties of many RNA sequences in a short time frame. High throughput RNA structure chemical probing technologies such as SHAPE-MaP allow for assaying RNA structure and interaction

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A Computational Approach for Designing Synthetic Riboswitches for Next-Generation RNA Therapeutics,erve as a molecular ‘switch’ that controls the RNA’s structure and function, typically influencing the synthesis of proteins. Riboswitches are unique because they directly interact with metabolites without the need for proteins, making them attractive tools in synthetic biology and RNA-based therape

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Monte Carlo Inverse RNA Folding,out Policy Adaptation (GNRPA) is a Monte Carlo search algorithm for optimizing a sequence of choices. It learns a playout policy to intensify the search of the state space near the current best sequence. The algorithm uses a prior on the possible actions so as to perform non uniform playouts when le

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,The Evolution of Nucleic Acid–Based Diagnosis Methods from the (pre-)CRISPR to CRISPR era and the A, trace and genotype detection of pathogens and pathogenic variants, various types of NATs have been developed since the discovery of PCR. As alternatives to traditional NATs (e.g., PCR), isothermal nucleic acid amplification techniques (INAATs) such as LAMP, RPA, SDA, HDR, NASBA, and HCA were inven

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1064-3745 ation advice from the experts.This volume provides comprehensive methods on RNA design. Chapters details traditional RNA design in secondary structure,  RNA design in tertiary structure, and RNA design applications and assessments. Written in the highly successful .Methods in Molecular Biology. seri

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Complex In Silico RNA Design with MoiRNAiFold,ing such RNA constructs. Here we introduce one such novel diagnostics technology (Apta-SMART) and show how to design (using MoiRNAiFold) and implement it, step by step. Moreover, we show how to combine this technique with well-known RNA amplification methods and briefly mention some encouraging results.

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Methods in Molecular Biologyhttp://image.papertrans.cn/r/image/820156.jpg