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Titlebook: E‑Cell System; Basic Concepts and A Satya Nanda Vel Arjunan,Pawan K. Dhar,Masaru Tomit Book 2013 Landes Bioscience and Springer Science+Bus

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发表于 2025-3-21 16:33:39 | 显示全部楼层 |阅读模式
书目名称E‑Cell System
副标题Basic Concepts and A
编辑Satya Nanda Vel Arjunan,Pawan K. Dhar,Masaru Tomit
视频video
概述Provides an overview of whole cell modeling and its fundamental concepts.Describes the Spatiocyte lattice-based simulation method which is developed as a set of E-Cell System plug in modules.Provides
丛书名称Molecular Biology Intelligence Unit
图书封面Titlebook: E‑Cell System; Basic Concepts and A Satya Nanda Vel Arjunan,Pawan K. Dhar,Masaru Tomit Book 2013 Landes Bioscience and Springer Science+Bus
描述The interdisciplinary field of molecular systems biology aims to understand the behavior and mechanisms of biological processes composed of individual molecular components. As we gain more qualitative and quantitative information of complex intracellular processes, biochemical modeling and simulation become indispensable not only to uncover the molecular mechanisms of the processes, but to perform useful predictions. To this end, the E‑Cell System, a multi‑algorithm, multi‑timescale object‑oriented simulation platform, can be used to construct predictive virtual biological systems. Gene regulatory and biochemical networks that constitute a sub‑ or a whole cellular system can be constructed using the E‑Cell System to perform qualitative and quantitative analyses. The purpose of E‑Cell System: Basic Concepts and Applications is to provide a comprehensive guide for the E‑Cell System version 3 in terms of the software features and its usage. While the publicly available E‑Cell Simulation Environment version 3 User‘s Manual provides the technical details of model building and scripting, it does not describe some of the underlying concepts of the E‑Cell System. The first part of the book
出版日期Book 2013
关键词Arjunan; Dhar; E‑Cell System; Overview; Tomita
版次1
doihttps://doi.org/10.1007/978-1-4614-6157-9
isbn_softcover978-1-4939-4761-4
isbn_ebook978-1-4614-6157-9Series ISSN 1431-0414
issn_series 1431-0414
copyrightLandes Bioscience and Springer Science+Business Media New York 2013
The information of publication is updating

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发表于 2025-3-22 00:15:50 | 显示全部楼层
https://doi.org/10.1007/978-3-476-04577-5opic scale. Here we describe the basic theory of the method and provide the installation and usage guides of the Spatiocyte modules. Where possible, model examples are also given to quickly familiarize the reader with spatiotemporal model building and simulation.
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发表于 2025-3-22 07:55:47 | 显示全部楼层
https://doi.org/10.1007/978-3-476-05610-8scriptions, translates them into its own internal model format and calculates trajectories of those models through time, either by recording the results in a file for future analysis, or in real time where the model state can be viewed or modified by the user at any point during execution.
发表于 2025-3-22 09:17:36 | 显示全部楼层
发表于 2025-3-22 16:49:14 | 显示全部楼层
Foundations of E-Cell Simulation Environment Architecturescriptions, translates them into its own internal model format and calculates trajectories of those models through time, either by recording the results in a file for future analysis, or in real time where the model state can be viewed or modified by the user at any point during execution.
发表于 2025-3-22 18:38:26 | 显示全部楼层
Decoding the Signaling Mechanism of Toll-Like Receptor 4 Pathways in Wild Type and Knockoutsimulus (MyD88 deficient, TRAF-6 deficient etc.). The model that best represents the experimental findings suggests that the pathways interact at more than one location: (i) TRIF to TRAF-6, (ii) TRIF-RIP1-IKK complex and (iii) TRIF to cRel via TBK1.
发表于 2025-3-22 22:16:15 | 显示全部楼层
1431-0414 eveloped as a set of E-Cell System plug in modules.Provides The interdisciplinary field of molecular systems biology aims to understand the behavior and mechanisms of biological processes composed of individual molecular components. As we gain more qualitative and quantitative information of complex
发表于 2025-3-23 03:25:28 | 显示全部楼层
Leben Eduards des Zweiten von England,ition where it is possible to create virtual replicas of games that genes play to keep the organism alive. The traditional reductionistic science is slowly but surely giving way to integrative science.
发表于 2025-3-23 08:21:19 | 显示全部楼层
A Guide to Modeling Reaction-Diffusion of Molecules with the E-Cell Systemopic scale. Here we describe the basic theory of the method and provide the installation and usage guides of the Spatiocyte modules. Where possible, model examples are also given to quickly familiarize the reader with spatiotemporal model building and simulation.
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