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Titlebook: DNA-Protein Interactions; Principles and Proto Benoît Leblanc,Tom Moss Book 2009Latest edition Humana Press 2009 Chromatin immunoprecipitat

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Uranyl Photofootprinting, acid complexes as well as potential (high affinity) cation (e.g., Mg.)-binding sites in folded nucleic acids. Finally, the cleavage modulation of duplex DNA reflects helix conformation in terms of minor groove width, due to preferential affinity/oxidation efficiency for such regions of the DNA helix.
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Identification of Nucleic Acid High-Affinity Binding Sequences of Proteins by SELEX,mplified by the polymerase chain reaction and is submitted to further rounds of selection. Each round of selection increases the proportion of sequences that are avidly bound by the protein of interest. The cloning and sequencing of these sequences finally completes their identification.
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The Use of Diethyl Pyrocarbonate and Potassium Permanganate as Probes for Strand Separation and Strne. The combination of both reagents gives excellent coverage of all sequence regions of DNA. Because reaction requires unstacking, the two reagents detect both melted regions and regions that are unstacked because of other distortions such as bending. Permanganate has the additional advantage that it can be utilized in living cells.
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Site-Directed Cleavage of DNA by Protein-Fe(II) EDTA Conjugates Within Model Chromatin Complexes,
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Determination of a Transcription Factor-Binding Site by Nuclease Protection Footprinting onto South
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