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Titlebook: DNA Damage Responses; Methods and Protocol Nima Mosammaparast Book 2022 The Editor(s) (if applicable) and The Author(s), under exclusive li

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Use of High-Performance Liquid Chromatography-Mass Spectrometry (HPLC-MS) to Quantify Modified Nuclof interest and still maintaining exquisite specificity. In this chapter, we demonstrate how to use HPLC-MS to analyze the catalytic activity of a nucleic acid demethylase, to quantify the prevalence of .-methyladenosine from RNA, and to determine the kinetics of alkylation damage repair.
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Data Acquisition and Getting Data into GIS,on chromatin immunoprecipitation (GLASS-ChIP) protocol. This method, combined with real-time PCR or next-generation sequencing, can identify sites of MRN endonucleolytic cutting adjacent to DNA-PK binding sites in human cells.
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Assessing DNA Damage Responses Using B Lymphocyte Cultures,mental systems with diverse applications for studying DNA damage responses. This chapter describes methods for generating these cellular systems, inducing and quantifying DSBs, and assessing DNA damage programs.
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Targeted Formation of 8-Oxoguanine in Telomeres,formation of the common oxidative lesion 8-oxo-guanine. Here, we describe this tool and detail how to generate cell lines which express FAP-mCER-TRF1 at telomeres and verify the formation of 8-oxo-guanine.
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