Titlebook: Computation in Living Cells; Gene Assembly in Cil Andrzej Ehrenfeucht,Tero Harju,Grzegorz Rozenberg Textbook 2004 Springer-Verlag Berlin He

genesis

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Accessing the Suffix Array via ,-Forestn the order in which they appear in such a gene, obtaining in this way just a string of pointers. This yields the framework of legal strings, which is more abstract than the framework of MDS descriptors because different MDS descriptors may yield the same legal string. In this chapter we investigate

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Accessing the Suffix Array via ,-Forestriptors, and legal strings) were done in the framework of strings. We will move now to a different mathematical framework by formalizing MDS structure of genes as graphs. This transition from strings to graphs is obtained by considering the overlap graphs of legal strings. Each pointer set occurring

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Indolent

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Pre-indexing Pruning Strategiesr main motivation still lies in the gene assembly process of ciliates. However, the model in this chapter is more general, and it can be seen as a graph theoretic formulation of the “fold and recombine” computing paradigm.

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