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Titlebook: Computation in Living Cells; Gene Assembly in Cil Andrzej Ehrenfeucht,Tero Harju,Grzegorz Rozenberg Textbook 2004 Springer-Verlag Berlin He

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发表于 2025-3-21 17:13:12 | 显示全部楼层 |阅读模式
书目名称Computation in Living Cells
副标题Gene Assembly in Cil
编辑Andrzej Ehrenfeucht,Tero Harju,Grzegorz Rozenberg
视频video
概述Makes underlying biology very accessible to computer science and mathematics students.First book/monograph on Computation in Living Cells.Includes supplementary material:
丛书名称Natural Computing Series
图书封面Titlebook: Computation in Living Cells; Gene Assembly in Cil Andrzej Ehrenfeucht,Tero Harju,Grzegorz Rozenberg Textbook 2004 Springer-Verlag Berlin He
描述.Natural Computing is concerned with computation that is taking place in Nature. The investigation of computations in living cells is one of the central and fastest growing areas of research in this field. Gene assembly in ciliates (unicellular organisms) is a splendid example of such computations, and it is fascinating from both the biological and the computational viewpoints. As a matter of fact, both biology and the science of computation have benefited from the interdisciplinary research on the computational nature of gene assembly – this work has helped to clarify important biological aspects of gene assembly, yielded novel insights into the nature of computation, and broadened our understanding of what computation is about. ..This monograph gives an accessible account of both the biology and the formal analysis of the gene assembly process. It can be used as a textbook for either graduate courses or seminars..
出版日期Textbook 2004
关键词Ciliates; Computational molecular biology; DNA computing; Gene assembly; Natural computing; Theory of com
版次1
doihttps://doi.org/10.1007/978-3-662-06371-2
isbn_softcover978-3-642-07401-1
isbn_ebook978-3-662-06371-2Series ISSN 1619-7127 Series E-ISSN 2627-6461
issn_series 1619-7127
copyrightSpringer-Verlag Berlin Heidelberg 2004
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New Perspectives on the Prefix Array,embling the macronuclear gene from its micronuclear form.) Second, we need to formalize the way that these objects are processed. i.e., we need to formalize the molecular operations used in the gene assembly as well as the effect of these operations on genes.
发表于 2025-3-22 03:46:46 | 显示全部楼层
Travis Gagie,Sana Kashgouli,Ben Langmeadns ., ., and . for gene assembly introduced in Chap. 3. Thus, these operations will be formalized as operations on (rewriting rules for) MDS descriptors. We also prove that this formal model is universal, i.e., every (realistic) MDS descriptor can be reduced to the MDS descriptor (., .) or its inverse . by these three operations.
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Takafumi Inoue,Shunsuke Inenaga,Hideo Bannaitive rule snr and its reverse rule, as well as a binary string rule. This model does not cover inversions, i.e., the string positive rule spr is not covered in this framework. However, we show how inversions can in fact be handled, provided that the initial string is available in multiple copies.
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Patterns of Subsets of Rulesing the role of this set of operations in the process of assembly is the following. What kind of realistic MDS arrangements (corresponding to realistic legal strings) can be successfully assembled by various subsets of this set?
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