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Titlebook: Studies in Complexity and Cryptography; Miscellanea on the I Oded Goldreich Book 2011 Springer-Verlag GmbH Berlin Heidelberg 2011 coding th

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Oded Goldreichence read originate from the same chromosome. Haplotype assembly approaches take advantage of this insight and predict haplotypes by assigning the reads to chromosomes in such a way that minimizes the number of conflicts between the reads and the predicted haplotypes. Unfortunately, assembly approac
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Oded Goldreichmance. In this paper, we close the gap by presenting the first provably efficient algorithm for the .. (.) problem that takes . space and . time in the worst case for any constant .. Our method extends the generalized suffix tree model to incorporate a carefully selected bounded set of perturbed suf
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Oded Goldreichre. SPARSE assigns reads to these clusters using a probabilistic model, which specifically penalizes non-specific mappings of reads from unknown sources and hence reduces false-positive assignments. Our evaluation on simulated datasets from two recent evaluation studies demonstrated the improved pre
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