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Titlebook: Research in Computational Molecular Biology; 15th Annual Internat Vineet Bafna,S. Cenk Sahinalp Conference proceedings 2011 Springer Berlin

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Constrained De Novo Sequencing of Peptides with Application to Conotoxins,ctrometry. We focus on two types of prior knowledge: homology to known sequences encoded by a regular expression or position-specific score matrix, and amino acid content encoded by a multiset of required residues. We show an application to de novo sequencing of cone snail toxins, which are molecule
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Causal Reasoning on Biological Networks: Interpreting Transcriptional Changes,al literature is growing exponentially. The PubMed database (Sayers et al., 2010) comprises more than 20 million citations as of October 2010. The goal of our method is the prediction of putative upstream regulators of observed expression changes based on a set of over 400,000 causal relationships.
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Identifying Branched Metabolic Pathways by Merging Linear Metabolic Pathways,e called . because they can arrive at a target compound through combinations of pathways that split compounds into smaller ones, work in parallel with many compounds, and join compounds into larger ones. While most previous work has focused on identifying linear metabolic pathways, branched metaboli
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