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Titlebook: Next Generation Sequencing; Methods and Protocol Steven R. Head,Phillip Ordoukhanian,Daniel R. Salo Book 2018 Springer Science+Business Med

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发表于 2025-3-21 17:34:21 | 显示全部楼层 |阅读模式
书目名称Next Generation Sequencing
副标题Methods and Protocol
编辑Steven R. Head,Phillip Ordoukhanian,Daniel R. Salo
视频video
概述Includes cutting-edge methods and protocols.Provides step-by-step detail essential for reproducible results.Contains key notes and implementation advice from the experts
丛书名称Methods in Molecular Biology
图书封面Titlebook: Next Generation Sequencing; Methods and Protocol Steven R. Head,Phillip Ordoukhanian,Daniel R. Salo Book 2018 Springer Science+Business Med
描述.This volume covers a wide range of various fields of research, with the common thread being Next Generation Sequencing (NGS) related methods and applications, as well as analysis and interpretation of the data obtained. Chapters guide readers through the highly dynamic processes of translational and transcriptional profiling of a cell, method to detect copy number alterations (CNAs), targeted sequencing applications,  method called “Hi-Plex” to characterize known polymorphic loci, single-cell of DNA or RNA, identify and characterize rare circulating CD4 T cells, and computational pipeline for RNAseq analysis. Written in the highly successful .Methods in Molecular Biology .series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls...Authoritative and practical, .Next Generation Sequencing: Methodsand Protocols. aims to be useful and informative for further study into this vital field. .
出版日期Book 2018
关键词ChIPseq; DNA Sequencing; NGS; RNA Sequencing; high throughput sequencing
版次1
doihttps://doi.org/10.1007/978-1-4939-7514-3
isbn_softcover978-1-4939-8507-4
isbn_ebook978-1-4939-7514-3Series ISSN 1064-3745 Series E-ISSN 1940-6029
issn_series 1064-3745
copyrightSpringer Science+Business Media, LLC 2018
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ClickSeq: Replacing Fragmentation and Enzymatic Ligation with Click-Chemistry to Prevent Sequence Ctrates how robust, bio-orthogonal chemistry can be harnessed in vitro to capture and dissect complex biological processes. Here, we describe an updated protocol for the synthesis of “ClickSeq” libraries.
发表于 2025-3-22 06:33:39 | 显示全部楼层
A Bloody Primer: Analysis of RNA-Seq from Tissue Admixtures,opment of a means of estimating the cell type composition of blood samples from their bulk RNA-Seq profiles. We also illustrate the importance of adjusting for the potential confounding effect of cellular heterogeneity in the context of statistical inference in a whole blood RNA-Seq dataset.
发表于 2025-3-22 10:50:57 | 显示全部楼层
Next-Generation Sequencing of Genome-Wide CRISPR Screens,ens using high-throughput next-generation sequencing (NGS) allows for the adoption of the technology in a variety of laboratories interested in diverse biologic questions. Here, we describe the protocol to generate next-generation sequencing libraries from genome-wide CRISPR genomic screens.
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An Integrated Polysome Profiling and Ribosome Profiling Method to Investigate In Vivo Translatome,ing purified B cells. We standardized our protocols to directly compare the results from these two approaches. Parallel assessment of translatome with these two approaches can generate a comprehensive picture on how translational regulation determines protein output.
发表于 2025-3-22 17:27:48 | 显示全部楼层
Genome-Wide Copy Number Alteration Detection in Preimplantation Genetic Diagnosis,hole genome amplification (WGA) on isolated blastomere(s), up to data analysis for CNA detection. The process is described generically and can also be used to perform CNA analysis on a limited number of cells (down to a single cell) in other applications. This unique description also includes some tips and tricks to increase the chance of success.
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Primer Extension, Capture, and On-Bead cDNA Ligation: An Efficient RNAseq Library Prep Method for Dg, nascent RNA sequencing, and other protocols where polymerase termination sites need to be profiled. The utilization of solid-phase bead chemistries facilitates simple workflow and efficient library yields.
发表于 2025-3-23 08:06:40 | 显示全部楼层
Genome-Wide Analysis of DNA Methylation in Single Cells Using a Post-bisulfite Adapter Tagging Apprpre-amplified with concomitant integration of the sequencing adapters, and libraries are subsequently amplified and indexed by PCR. Using scBS-Seq we can accurately measure DNA methylation at up to 50% of individual CpG sites and 70% of CpG islands.
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