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Titlebook: Genotyping; Methods and Protocol Stefan J. White,Stuart Cantsilieris Book 2017 Springer Science+Business Media New York 2017 DNA.Taqman-bas

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发表于 2025-3-21 19:10:22 | 显示全部楼层 |阅读模式
书目名称Genotyping
副标题Methods and Protocol
编辑Stefan J. White,Stuart Cantsilieris
视频video
概述Includes cutting-edge methods and protocols.Provides step-by-step detail essential for reproducible results.Contains key notes and implementation advice from the experts.Includes supplementary materia
丛书名称Methods in Molecular Biology
图书封面Titlebook: Genotyping; Methods and Protocol Stefan J. White,Stuart Cantsilieris Book 2017 Springer Science+Business Media New York 2017 DNA.Taqman-bas
描述.This volume explores a broad range of different genotyping techniques. .Genotyping: Methods and Protocols. consists of chapters that cover numerous topics such as: an overview of multiplexed microsatellite analysis; High Resolution Melt analysis and TaqMan-based assays; in situ analysis of variants in single RNA molecules; the MassARRAY system and Molecular Inversion Probes; Pulsed Field Gel Electrophoresis, Paralogue Ratio Test, and Multiplex Ligation-Dependent Probe Amplification; long-range PCR combined with PacBio sequencing; Targeted Locus Amplification; Multilocus Sequence Typing and rapid SNP detection with pyrosequencing; and genotyping-by-sequencing for plant analysis. Finally, the volume concludes with a summary of pertinent points to describe genetic variation. Written in the highly successful .Methods in Molecular Biology .series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step,readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls..Thorough and practical, .Genotyping: Methods and Protocols .is a valuable resource for anyone interested in learning m
出版日期Book 2017
关键词DNA; Taqman-based assays; RNA molecules; Molecular Inversion Probes; copy number variation (CNV); Pulsed
版次1
doihttps://doi.org/10.1007/978-1-4939-6442-0
isbn_softcover978-1-4939-8201-1
isbn_ebook978-1-4939-6442-0Series ISSN 1064-3745 Series E-ISSN 1940-6029
issn_series 1064-3745
copyrightSpringer Science+Business Media New York 2017
The information of publication is updating

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发表于 2025-3-21 23:29:54 | 显示全部楼层
Genotyping DNA Variants with High-Resolution Melting Analysis,destructive closed tube assay; after PCR, DNA melting can directly be performed on the amplified samples without any purification or separation steps. For single SNP genotyping, HRMA is an attractive alternative to Sanger sequencing, restriction enzyme analysis, and hydrolysis probes.
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In Situ Single-Molecule RNA Genotyping Using Padlock Probes and Rolling Circle Amplification,ys rely on whole specimen extracts, where heterogeneous spatial context of the specimen is lost. This chapter describes an up-to-date protocol for multiplexed, in situ genotyping of RNA in preserved tissue and cell lines, using padlock probes and rolling circle amplification. The presented approach
发表于 2025-3-22 10:50:33 | 显示全部楼层
,The MassARRAY® System for Targeted SNP Genotyping, The use of genome-wide SNP genotyping arrays has become increasingly more commonplace for gene discovery. However, smaller-scale genotyping platforms capable of efficiently genotyping tens to hundreds of SNPs are still crucial for many aspects of this work, including replication of associations. Th
发表于 2025-3-22 15:02:07 | 显示全部楼层
Targeted Capture and High-Throughput Sequencing Using Molecular Inversion Probes (MIPs),cing of genomic DNA. Several thousand genomic targets can be selectively captured using long oligonucleotides containing unique targeting arms and universal linkers. The ability to append sequencing adaptors and sample-specific barcodes allows large-scale pooling and subsequent high-throughput seque
发表于 2025-3-22 18:06:42 | 显示全部楼层
Analyzing Copy Number Variation Using Pulsed-Field Gel Electrophoresis: Providing a Genetic Diagnos4. In unaffected individuals the number of 3.3 kb D4Z4 units varies between 8 and 100, whereas 1–10 units are seen in FSHD1 cases. A homologous and heterogenous D4Z4 array can be found on chromosome 10q, but contractions of this array are typically not associated with FSHD. Discriminating between th
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Analysis of Copy Number Variation Using the Paralogue Ratio Test (PRT),ource of genetic variation within species. However, reliably determining copy number of a particular DNA sequence for a large number of samples can be challenging. Here, I describe and review the paralogue ratio test (PRT) in detail. PRT was developed to robustly type the CNV of the beta-defensin lo
发表于 2025-3-23 02:13:55 | 显示全部楼层
Genotyping Multiallelic Copy Number Variation with Multiplex Ligation-Dependent Probe Amplificationers of specific genes have been associated with different diseases. Precise genotyping of these loci can be complicated, and relies on accurate assays. Multiplex ligation-dependent probe amplification (MLPA) is a PCR-based approach that allows copy number determination of up to 50 genomic loci in a
发表于 2025-3-23 08:22:39 | 显示全部楼层
Analysis of Multiallelic CNVs by Emulsion Haplotype Fusion PCR,s very numerous small reaction chambers in which different PCR products from a single genomic DNA molecule are condensed into short joint products, to unite sequences in . from widely separated genomic sites. These products can therefore provide information about the arrangement of sequences and var
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