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Titlebook: Gene Prediction; Methods and Protocol Martin Kollmar Book 2019 Springer Science+Business Media, LLC, part of Springer Nature 2019 mGene.Com

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AnABlast: Re-searching for Protein-Coding Sequences in Genomic Regions,e efficiently targeted by AnABlast. Furthermore, this algorithm is particularly useful in detecting protein-coding sequences with nonsignificant homologs to sequences in databases. AnABlast can be executed online at ..
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Choreography and Verbatim Theatre exons not only in introns but also in up- and downstream regions in case of incompleteness of the search sequence. In this chapter, I describe how to use Scipio and WebScipio keeping a first-time user in mind.
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https://doi.org/10.1007/978-1-4684-1062-4te report scores based on not just the coverage of reference genes but also on sequence lengths, allowing quality control in multiple aspects. This chapter focuses on the procedure for such assessment and provides technical tips for higher accuracy.
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Whole-Genome Annotation with BRAKER,en extended to the integration of data on mapped cross-species proteins, and to the usage of heterogeneous extrinsic evidence, both RNA-Seq and protein alignments. In this book chapter, we briefly summarize the pipeline methodology and describe how to apply BRAKER in environments characterized by various combinations of external evidence.
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Evaluating Genome Assemblies and Gene Models Using gVolante,te report scores based on not just the coverage of reference genes but also on sequence lengths, allowing quality control in multiple aspects. This chapter focuses on the procedure for such assessment and provides technical tips for higher accuracy.
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