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Titlebook: Environmental Microbial Evolution; Methods and Protocol Haiwei Luo Book 2022 The Editor(s) (if applicable) and The Author(s), under exclusi

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发表于 2025-3-21 20:05:53 | 显示全部楼层 |阅读模式
书目名称Environmental Microbial Evolution
副标题Methods and Protocol
编辑Haiwei Luo
视频video
概述Includes cutting-edge methods and protocols.Provides step-by-step detail essential for reproducible results.Contains key notes and implementation advice from the experts
丛书名称Methods in Molecular Biology
图书封面Titlebook: Environmental Microbial Evolution; Methods and Protocol Haiwei Luo Book 2022 The Editor(s) (if applicable) and The Author(s), under exclusi
描述This volume explores the latest techniques used to study environmental microbial evolution, with a focus on methods capable of addressing deep evolution at long timescales. The chapters in this book are organized into three parts. Part One introduces molecular dating approaches and time calibration ideas that allow for the determination of evolutionary timescales of microbial lineages. Part Two describes several advanced phylogenomic tools such as models for genome tree construction, a taxon sampling method, outgroup-independent tree-rooting methods, and gene family evolution models. Part Three covers techniques used to study trait evolution. Written in the highly successful .Methods in Molecular Biology. series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls..Cutting-edge and comprehensive, .Environmental Microbial Evolution: Methods and Protocols. is a valuable tool for all researchers who are interested in learning more about this important and evolving field.. .
出版日期Book 2022
关键词molecular clock calibration; Alphaproteobacteria; eukaryotic mitochondria; horizontal gene transfer; Eco
版次1
doihttps://doi.org/10.1007/978-1-0716-2691-7
isbn_softcover978-1-0716-2693-1
isbn_ebook978-1-0716-2691-7Series ISSN 1064-3745 Series E-ISSN 1940-6029
issn_series 1064-3745
copyrightThe Editor(s) (if applicable) and The Author(s), under exclusive license to Springer Science+Busines
The information of publication is updating

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Fiscal Justice and Renewing Educationsons of large tree of life studies show that choice and number of species used in a dataset can alter the topology obtained. Thus, taxon sampling is, in itself, a process that needs to be fully investigated to determine its effect on phylogenetic stability. Here, we present the theory and practical
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https://doi.org/10.1007/978-3-030-35129-8 of gene gains and losses in each branch), for statistically contrasting competing hypotheses (e.g., accelerations of the gene turnover rates at pre-defined clades), and for pinpointing gene family expansions or contractions likely driven by natural selection. In this chapter we review the theoretic
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1064-3745 hods and Protocols. is a valuable tool for all researchers who are interested in learning more about this important and evolving field.. .978-1-0716-2693-1978-1-0716-2691-7Series ISSN 1064-3745 Series E-ISSN 1940-6029
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Dating Microbial Evolution with MCMCtreedvice on issues such as construction of the time and rate prior and assessment of convergence of MCMC chains. Strategies for estimating times in microbial phylogenies for which neither fossil information nor sampling times are known are discussed.
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Standard Candles for Dating Microbial Lineagesan be propagated and applied using both microbial species trees and individual gene family phylogenies. We also provide detailed evaluations of several candidate standard candles and discuss their suitability in light of their often complex evolutionary and metabolic histories.
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