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Titlebook: DNA-Protein Interactions; Principles and Proto Benoît P. Leblanc,Sébastien Rodrigue Book 2015Latest edition Springer Science+Business Media

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Aggregate and Heatmap Representations of Genome-Wide Localization Data Using VAP, a Versatile Aggre it is often useful to represent the signal over known regions of interest, such as genes, using aggregate or individual profiles. In the present chapter, we describe and explain the best practices on how to generate such profiles as well as other usages of the versatile aggregate profiler (VAP) too
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,Circular Dichroism for the Analysis of Protein–DNA Interactions,CD) in protein–nucleic acids interaction solution studies. The chapter will describe the guidelines appropriate to designing experiments and conducting correct data interpretation, the use of both benchtop and synchrotron CD approaches is discussed and the advantages of SRCD outlined. Further inform
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Studies in Computational Intelligencee technique entitled FAIRE (formaldehyde-assisted isolation of regulatory elements). Combined with high-throughput sequencing (FAIRE-seq), this procedure allows isolation of nucleosome-free regions and their mapping along the genome, thereby providing a global view of cell-specific regulatory elements.
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Book 2015Latest editionques proven by their continuous value, the volume also many new chapters have been added that mostly deal with larger-scale experiments, reflecting recent advances in "big biology", combining to offer a very useful compendium of protocols allowing readers to delve into the intricacies of protein-DNA
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