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Titlebook: Computer Analysis of Sequence Data Part II; Annette M. Griffin,Hugh G. Griffin Book 1994 Humana Press 1994

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Computer Analysis of Sequence Data,t of DNA sequencing performed worldwide has increased exponentially each year and this trend will almost certainly continue for the next few years at least. The importance of this technique is underlined by the volume of research funds now being channelled into genome sequencing projects, and by the
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Staden: Statistical and Structural Analysis of Nucleotide Sequences,e, dinucleotide and codon compositions, potential amino acid compositions, and the relative frequencies of each base in each position of codons are covered. This chapter describes how to produce plots to show regions of unusual composition and to measure the codon bias for a gene. In addition, it de
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Staden: Searching for Restriction Sites,rcular sequences can be searched, and the results can be listed in various forms or displayed graphically. The recognition sequences to be searched for can be typed on the keyboard or read from files. The format of these files is given in .. The end of the chapter also describes how to produce back-
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Staden: Analyzing Sequences to Find Genes,he positions of stop codons. All the methods are contained in the program NIP. The correct interpretation of the analyses presented requires a good understanding of the underlying ideas used by the methods. Despite this, this chapter concentrates here on the use of the techniques, the reader is refe
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