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Titlebook: Computer Analysis of Sequence Data Part II; Annette M. Griffin,Hugh G. Griffin Book 1994 Humana Press 1994

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Jean-François Jaulent,Alexis Michels. All of the searches produce both listed and graphical output. The listed output displays the matching sequence and its position, and the graphical output draws a box to represent the length of the sequence and plots vertical lines within the box at the positions of matches. The heights of the lines are proportional to the match score (..).
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Staden: Searching for Motifs in Nucleic Acid Sequences,s. All of the searches produce both listed and graphical output. The listed output displays the matching sequence and its position, and the graphical output draws a box to represent the length of the sequence and plots vertical lines within the box at the positions of matches. The heights of the lines are proportional to the match score (..).
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Staden: Using Patterns to Analyze Protein Sequences, segment of sequence matching each individual motif in the pattern, display all the sequence between and including the two outermost motifs, produce a description of the match in the form of a . feature table, or draw a simple graphical plot.
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MacVector: Aligning Sequences,and mismatch values defined by the user. If this initial score for a matching region exceeds a cutoff score, an optimal alignment is performed, inserting deletions and gaps as necessary to improve the score. The alignment with the best optimized score is saved and reported to the user.
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