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Titlebook: Computational Methods in Systems Biology; 19th International C Eugenio Cinquemani,Loïc Paulevé Conference proceedings 2021 Springer Nature

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Perspective Management Strategies,the reduced model harder to interpret..We design and implement an algorithm that, given an exact linear reduction, re-parametrizes it by performing an invertible transformation of the new coordinates to improve the interpretability of the new variables. We apply our algorithm to three case studies a
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Debra Jackson,Patricia M. Davidson,Kim Ushertificial neural network (ANN) based strategy to identify a proteomic signature that helps discriminating patients at low and high risk of recurrence. In a first stage, we implemented a Repeated Editing Nearest Neighbors algorithm to select a homogeneous sub-sample of VTE patients. This sub-sample wa
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https://doi.org/10.1007/978-3-319-11176-6 assumption combinations give qualitatively different predictions on microbial coexistence by differential substrate utilization. This fundamental mechanism is critically under explored in the steady state GSM literature with its strong focus on coexistence states due to crossfeeding (division of la
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Successful Family Language Policyr efficiency gains when the number of applicable reactions in a configuration becomes small. As a Python library, . also includes many useful tools for data visualization in Jupyter notebooks, allowing robust visualization of time dynamics such as histogram plots at time snapshots and averaging repe
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Interpretable Exact Linear Reductions via Positivity,the reduced model harder to interpret..We design and implement an algorithm that, given an exact linear reduction, re-parametrizes it by performing an invertible transformation of the new coordinates to improve the interpretability of the new variables. We apply our algorithm to three case studies a
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