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Titlebook: Computational Methods in Systems Biology; 12th International C Pedro Mendes,Joseph O. Dada,Kieran Smallbone Conference proceedings 2014 Spr

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Comparative Effectiveness Researchidelines for properly tuning them. The performance of this procedure and its advantages are illustrated with a well known benchmark problem considering several scenarios of data availability and measurement noise.
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Uncertainty Analysis for Non-identifiable Dynamical Systems: Profile Likelihoods, Bootstrapping and n-identifiable parameters. We showed that bootstrapping, multi-start optimisation, and Fisher information matrix based approaches yield misleading results for parameters which are structurally non-identifiable. We provide a simple and intuitive explanation for this, using geometric arguments.
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Optimal Management of Agricultural Systemsve proportion of cell death caused by bystander signalling, the risk of non-lethal damage and the probability of observing bystander signalling for a given dose. This work provides the foundation for modelling bystander effects caused by biologically realistic dose distributions, with implications for cancer therapies.
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A Rule-Based Model of Base Excision Repairddress these questions we designed a model of the Base Excision Repair pathway in Kappa, a rule based formalism for modeling protein-protein and protein-DNA interactions. We use this model to shed light on the key role of the scaffolding protein XRCC1 in coordinating the repair process.
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