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Titlebook: Computation in Living Cells; Gene Assembly in Cil Andrzej Ehrenfeucht,Tero Harju,Grzegorz Rozenberg Textbook 2004 Springer-Verlag Berlin He

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Philip Bille,Inge Li Gørtz,Tord Stordalen, in the framework of MDS descriptors each MDS is represented by the pair of its pointers, with each pointer represented by its own symbol. Correspondingly, the IUS descriptor of a micronuclear or an intermediate gene is the string of pairs of pointers corresponding to the sequence of MDSs.
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An Overview of the Cellprincipal molecules that prescribe cell structures and functions. Cells duplicate by growing and replicating the DNA in their chromosomes. They distribute the duplicated copies of chromosomes (DNA) to daughter cells, which form by pinching of a cell into two cells.
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Textbook 2004al and fastest growing areas of research in this field. Gene assembly in ciliates (unicellular organisms) is a splendid example of such computations, and it is fascinating from both the biological and the computational viewpoints. As a matter of fact, both biology and the science of computation have
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Accessing the Suffix Array via ,-Forest the basic properties of the representation of the MDS structure by legal strings. In particular, we characterize those legals string that either correspond directly to . MDS descriptors or that can be signed so as to correspond to realistic MDS descriptors.
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Accessing the Suffix Array via ,-Forest in a legal string determines the substring of this string delimited by the two occurrences of this pointer set, and the overlap graph of a legal string represents the overlapping structures of all such substrings. In this chapter we introduce the basic notions concerning overlap graphs and study their relationship to (realistic) legal strings.
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Lecture Notes in Computer Sciencephs represents a considerable increase in abstraction (indeed, the linear structure of legal strings is lost!), we prove that the graph pointer reduction system is equivalent to the string pointer reduction system as far as strategies for gene assembly are concerned.
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1619-7127 omputation is about. ..This monograph gives an accessible account of both the biology and the formal analysis of the gene assembly process. It can be used as a textbook for either graduate courses or seminars..978-3-642-07401-1978-3-662-06371-2Series ISSN 1619-7127 Series E-ISSN 2627-6461
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