Titlebook: Comparative Genomics; International Worksh Craig E. Nelson,Stéphane Vialette Conference proceedings 2008 Springer-Verlag Berlin Heidelberg

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Sorting Genomes with Insertions, Deletions and Duplications by DCJ,in one genome which are completely or partially unmatched in the other. The existence of unmatched gene ends introduces new kinds of paths in the adjacency graph, since some paths can now terminate internal to a chromosome and not on telomeres. We introduce Òghost adjacenciesÓ to supply the missing

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,A Fast and Exact Algorithm for the Median of Three Problem—A Graph Decomposition Approach,g the median problem. In this paper, focusing on the median of three problem, we prove more important properties about adequate subgraphs with rank 3 and discuss the algorithms inventorying simple adequate subgraphs. After finding simple adequate subgraphs of small sizes, we incorporate them into AS

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Sorting Cancer Karyotypes by Elementary Operations,errations in cancer. These aberrations, which result in abnormally structured genomes, became a hallmark of cancer. Many studies give evidence to the connection between chromosomal alterations and aberrant genes involved in the carcinogenesis process. An important problem in the analysis of cancer g

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Internal Validation of Ancestral Gene Order Reconstruction in Angiosperm Phylogeny,e multiplicity of solutions to the genome halving process. Using the genome of a related species (the outgroup) to guide the halving of a WGD descendant attenuates this problem. We investigate a battery of techniques for further improvement, including an unbiased version of the guided genome halving

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