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Titlebook: Comparative Genomics; 16th International C Mathieu Blanchette,Aïda Ouangraoua Conference proceedings 2018 Springer Nature Switzerland AG 20

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: A Maximum-Likelihood Approach to Phylogeny Reconstruction Using Multiple Spaced-Word Matches and Qall, gap-free alignments involving four taxa each. For each of these alignments, it then calculates a quartet tree and, finally, the program . is used to infer a super tree for the full set of input taxa from the calculated quartet trees. Experimental results show that trees calculated with our approach are of high quality.
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https://doi.org/10.1007/978-3-322-88730-6wn disadvantages. In the current paper we consider a very general model and provide a flexible estimator as well as the limits of applicability for the most popular estimation methods, such as the maximum parsimony method.
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Designgewichte in komplexen Stichproben,, we show that the associated decision problem is NP-hard. We then give an exact exponential-time algorithm for this problem, assess its time efficiency on simulated datasets, and give a proof of concept on the opioid receptor genes.
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Reconstructing the History of Syntenies Through Super-Reconciliation, we show that the associated decision problem is NP-hard. We then give an exact exponential-time algorithm for this problem, assess its time efficiency on simulated datasets, and give a proof of concept on the opioid receptor genes.
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0302-9743 C, Canada, in October 2018..The 18 full papers presented were carefully reviewed and selected from 29 submissions. The papers cover topics such as: genome rearrangements; genome sequencing; applied comparative genomics; reconciliation and coalescence; and phylogenetics..978-3-030-00833-8978-3-030-00
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On the Hardness of Approximating Linearization of Scaffolds Sharing Repeated Contigstracting the unique parts of such solutions, we extend previously known NP-hardness results to the case that the solution graph is planar, bipartite, and subcubic, and show the APX-completeness in this case. We also provide some practical tests.
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