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Titlebook: Comparative Genomics; RECOMB 2007, Interna Glenn Tesler,Dannie Durand Conference proceedings 2007 Springer-Verlag Berlin Heidelberg 2007 DN

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Inferring a Duplication, Speciation and Loss History from a Gene Tree (Extended Abstract),family be explained with only speciation and duplication events, and without gene loss. We show that this question can be answered in linear time, and that such a gene tree induces a single species tree consistent with a history with no loss. We then present a heuristic for the following problem: if
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Selecting Genomes for Reconstruction of Ancestral Genomes,er accuracy for the reconstruction of ancestral character states. These facts lead to studying the genome selection for reconstruction problem. In this work, two greedy algorithms for this problem are proposed and tested on computer simulation data as well as a biological example.
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A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications,e propose a heuristic algorithm for reconstructing ancestral genomic orders with duplications. The method starts from the order of genes in modern genomes and predicts predecessor and successor relationships in the ancestor. Then a greedy algorithm is used to reconstruct the ancestral orders by conn
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Reconstructing an Inversion History in the , Complex,ts are known. The .complex consists of seven African mosquito species that can be differentiated based on ten fixed inversions. However, the phylogenetic relationships among the members remain unclear. This paper demonstrates that physical maps of the outgroup species. and .can be used for determini
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