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Titlebook: Comparative Genomics; 21st International C Celine Scornavacca,Maribel Hernández-Rosales Conference proceedings 2024 The Editor(s) (if appli

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International Political Economy Seriesy of high-quality predictions of protein three-dimensional structures (3D), has made it possible to use structural similarities for the inference of homology beyond what is possible from sequence analyses alone. This work explores the potential to use such 3D structures for the identification of TFs
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International Political Economy Seriesto the host intracellular machinery, which occur over the evolution of the virus, and during the emergence of new viral strains with different properties. One aspect of viral adaptation is related to the efficiency of recruiting the host’s gene expression machinery and specifically the translation m
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Statistically Consistent Estimation of Rooted and Unrooted Level-1 Phylogenetic Networks from SNP Da, allowing for multiple crossover events. Thus, each SNP is assumed to have evolved under the infinite sites assumption down some tree inside the phylogenetic network. We prove that level-1 phylogenetic networks can be reconstructed uniquely from any set of SNPs that cover all bipartitions of the ro
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Inferring Transcript Phylogenies from Transcript Ortholog Clustersscript isoforms from a gene. Recent studies have highlighted that the transcript isoforms of human genes are often conserved in orthologous genes from various species. The conserved transcripts are referred to as transcript orthologs, and the identification of transcript ortholog groups provides val
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