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Titlebook: Combinatorial Pattern Matching; 15th Annual Symposiu Suleyman Cenk Sahinalp,S. Muthukrishnan,Ugur Dogru Conference proceedings 2004 Springe

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Takanori Ida,Makoto Tanaka,Koichiro Itosomorphism or homeomorphism) in all of the input trees with as many labeled leaves as possible. We study the ordered variants of MAST where the trees are uniformly or non-uniformly ordered. We provide the first known polynomial-time algorithms for the uniformly and non-uniformly ordered homeomorphic
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Takanori Ida,Makoto Tanaka,Koichiro Itootein structure with amino acid residues via its ., . a . in which the amino acids are classified as . (H) or . (P), . an .Φ defined in terms of the target structure that should . sequences with a . and . those with . (in the Canonical model, the energy function Φ gives an H-H residue contact in the
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Lecture Notes in Computer Sciencehttp://image.papertrans.cn/c/image/229999.jpg
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https://doi.org/10.1007/b983773D; Alignment; DOM; Multimedia; algorithms; approximation; combinatorial pattern matching; complexity; data
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978-3-540-22341-2Springer-Verlag Berlin Heidelberg 2004
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Michael Valocchi,John Juliano,Allan Schurrs for circular sequences. We give lower and upper bounds as well as guaranteed approximation ratios for these three cases. The main result in this paper is an optimal polynomial-time algorithm for sorting circular 0/1 sequences when the cost function is additive.
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Smart Grid Applications and Developmentsrithm offers a performance guarantee: the sensitivity of a chosen seed set is at least 70% of what can be achieved, in most reasonable models of homologous sequences. Our method achieves performance comparable to that of a greedy algorithm, but our work gives this area a mathematical foundation.
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,Energy Systems Today and Tomorrow, theoretic model (NLG) for analyzing algorithms based on this approach, prove that the RNA multiple alignment problem is NP-Complete in this model, and present a polynomial time algorithm that approximates the optimal structure of size . within a factor of .(log. .).
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