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Titlebook: Combinatorial Pattern Matching; 4th Annual Symposium Alberto Apostolico,Maxime Crochemore,Udi Manber Conference proceedings 1993 Springer-V

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https://doi.org/10.1007/978-3-319-53327-8 consider the problem of computing the shortest series of reversals that transform one permutation to another. The permutations describe the order of genes on corresponding chromosomes, and a . takes an arbitrary substring of elements and reverses their order..For this problem we develop two algorit
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Boris A. Kulik,Alexander Ya. Fridman., for which ..,..., r. and .., ... r. are similar. In this paper we consider two criterions of similarity: the Hamming distance (. mismatches) and the edit distance (. differences). For a string . of length . and an integer . our algorithm reports all locally optimal approximate repeats, ., for whi
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Studies in Systems, Decision and Controla mismatch (the pattern does not occur beginning at that location in the text) or a potential match (the pattern may occur beginning at that location in the text). Some of the potential matches could be ., i.e., the pattern may not occur beginning at some location in the text declared to be a potent
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Patrick Margardt,Tieto Deutschland GmbHr by at most . mismatches. This problem is motivated by the dot-matrix constructions for sequence comparison and optimal oligonucleotide probe selection routinely used in molecular biology. In the case . the problem coincides with the classical . problem. We present a new approach to this problem ba
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Christian Friege,Ralph Kampwirth the edit distance between . and . is ≤ . is considered. We concentrate on the special case in which . is available for preprocessing before the searches with varying . and .. It is shown how the searches can be done fast using the suffix tree of . augmented with the suffix links as the preprocessed
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