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Titlebook: CRISPR; Methods and Protocol Magnus Lundgren,Emmanuelle Charpentier,Peter C. Fi Book 2015 Springer Science+Business Media New York 2015 CRI

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Book 2015chemical and structural levels. .CRISPR: Methods and Protocols. guides readers through techniques that have been developed specifically for the analysis of CRISPR-Cas and techniques adapted from standard protocols of DNA, RNA and protein biology. Written in the highly successful .Methods in Molecula
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Jesus Soto,Patricia Melin,Oscar Castillots in DNA degradation. Here, we describe assays for monitoring of St-Cas3 nuclease, ATPase and helicase activities in a stand-alone form and in the presence of the Cascade ribonucleoprotein complex. These assays can be easily adapted for biochemical analysis of Cas3 proteins from different microorganisms.
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Analysis of crRNA Using Liquid Chromatography Electrospray Ionization Mass Spectrometry (LC ESI MS) performed using RNase digestion in conjunction with liquid chromatography tandem MS analysis. Using the intact mass of the crRNA, in conjunction with RNase mapping experiments enabled the identification and characterisation of the crRNA, providing further insight into crRNA processing in a number of type I CRISPR-Cas systems.
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Computational Detection of CRISPR/crRNA Targets,s have a discriminatory role in accurate target detection. Here, we describe a bioinformatic method, called CRISPRTarget, to use the sequence of a CRISPR array (e.g., predicted via CRISPRDetect/CRISPRDirection) to identify the foreign nucleic acids it targets.
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Exploring CRISPR Interference by Transformation with Plasmid Mixtures: Identification of Target Intompared to those obtained for a reference molecule in independent experiments. Here we describe the use of a transforming mixture of plasmids that includes the non-targeted vector as an internal reference to obtain normalized data which are unbiased by empirical variations.
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Expression and Purification of the CMR (Type III-B) Complex in ,,xes, which degrade invading nucleic acids in a sequence homology-dependent manner in many prokaryotic species. Here, we describe the expression of a tandem-tagged subunit of the Type III-B (CMR) complex in . and subsequent isolation and purification of the whole complex by affinity purification of the tagged subunit.
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