Titlebook: Brachypodium Genomics; Methods and Protocol Gaurav Sablok,Hikmet Budak,Peter J. Ralph Book 2018 Springer Science+Business Media LLC 2018 im

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DNA Replication Units in Eukaryotes,e sequence resources for . crops, wheat, and barley. We introduce the functionalities and availability of these important information resources. Furthermore, we also present brief descriptions of useful online tools that facilitate Brachypodium functional genomics studies.

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Raffaele Badolato,Silvano Sozzaniaccomplish this protocol, the readers need some basic command-line skills. Briefly, the protocol comprises four major steps: downloading data and software, setting up computing environment, preparing data, and estimating CUB.

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Review of International Studies of LITbeen identified both in animal and plant systems, the regulatory roles of lncRNAs are only beginning to be recognized and the molecular basis of lncRNA mediated gene regulation remains largely unexplored, particularly in plants..Here, we describe an efficient methodology to identify long noncoding RNAs using next-generation sequencing data.

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A. Castellani,C. Catena,G. Biondified conserved AS patterns among monocot and dicot plants. In this chapter, using a Brachypodium-virus pathosystem as a research template, we provide an overview of genomic and bioinformatic tools that can be used to investigate constitutive and alternative splicing in plants.

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https://doi.org/10.1007/978-3-642-74225-5by mapping of the smallRNAs taking into account the transcript coordinates. Here, we describe a workflow that can be used for the identification . and corresponding phasiRNAs in . using publically availabe smallRNAs datasets.

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