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Titlebook: Biological Networks and Pathway Analysis; Tatiana V. Tatarinova,Yuri Nikolsky Book 2017 Springer Science+Business Media LLC 2017 Protein-p

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Rule Mining Techniques to Predict Prokaryotic Metabolic Pathways,utomatic annotation system (ARBA4Path Association Rule-Based Annotator for Pathways) that utilizes rule mining techniques to predict metabolic pathways across wide range of prokaryotes. It was demonstrated that specific combinations of protein domains (recorded in our rules) strongly determine pathw
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ArrayTrack: An FDA and Public Genomic Tool,mic approaches, such as DNA microarrays, inextricably relies on appropriate data management, the ability to extract knowledge from massive amounts of data and the availability of functional information for data interpretation. At the FDA’s National Center for Toxicological Research (NCTR), we are de
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Identification of Transcriptional Regulators of Psoriasis from RNA-Seq Experiments, of regulation of the disease we performed RNA sequencing (RNA-Seq) analysis of 14 pairs of skin samples collected from psoriatic patients. Subsequent pathway analysis and an extraction of transcriptional regulators governing psoriasis-associated pathways was executed using a combination of MetaCore
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Mathematical Justification of Expression-Based Pathway Activation Scoring (PAS), the relative importance for each gene product in a molecular pathway remains unclear unless one call for the methods of parameter sensitivity/stiffness analysis in the interactomic kinetic models of signaling pathway activation in terms of total concentrations of each gene product..Here we show two
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