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Titlebook: Bioinformatics and Phylogenetics; Seminal Contribution Tandy Warnow Book 2019 Springer Nature Switzerland AG 2019 Bioinformatics.Phylogenet

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发表于 2025-3-21 18:36:28 | 显示全部楼层 |阅读模式
期刊全称Bioinformatics and Phylogenetics
期刊简称Seminal Contribution
影响因子2023Tandy Warnow
视频video
发行地址Presents a collection of self-contained contributions, each offering an introduction to a topic of current interest in computational biology.Covers topics on phylogenetic tree and network estimation,
学科分类Computational Biology
图书封面Titlebook: Bioinformatics and Phylogenetics; Seminal Contribution Tandy Warnow Book 2019 Springer Nature Switzerland AG 2019 Bioinformatics.Phylogenet
影响因子.This volume presents a compelling collection of state-of-the-art work in algorithmic computational biology, honoring the legacy of Professor Bernard M.E. Moret in this field. Reflecting the wide-ranging influences of Prof. Moret’s research, the coverage encompasses such areas as phylogenetic tree and network estimation, genome rearrangements, cancer phylogeny, species trees, divide-and-conquer strategies, and integer linear programming. Each self-contained chapter provides an introduction to a cutting-edge problem of particular computational and mathematical interest..Topics and features: addresses the challenges in developing accurate and efficient software for the NP-hard maximum likelihood phylogeny estimation problem; describes the inference of species trees, covering strategies to scale phylogeny estimation methods to large datasets, and the construction of taxonomic supertrees; discusses the inference of ultrametric distances from additive distance matrices, and the inference of ancestral genomes under genome rearrangement events; reviews different techniques for inferring evolutionary histories in cancer, from the use of chromosomal rearrangements to tumor phylogenetics app
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发表于 2025-3-21 22:48:41 | 显示全部楼层
Numerical Optimization Techniques in Maximum Likelihood Tree Inference,ogous genetic sequences under the maximum likelihood criterion. In particular, we detail how the use of matrix algebra at the core of Felsenstein’s pruning algorithm, combined with the architecture of modern day computer processors, leads to efficient techniques for optimizing edge lengths. We also
发表于 2025-3-22 00:40:36 | 显示全部楼层
High-Performance Phylogenetic Inference,t research on parallelization and performance optimization of state-of-the-art tree inference tools. We outline advances in shared-memory multicore parallelization, optimizations for efficient Graphics Processing Unit (GPU) execution, as well as large-scale distributed-memory parallelization.
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发表于 2025-3-22 11:48:03 | 显示全部楼层
Divide-and-Conquer Tree Estimation: Opportunities and Challenges,olutions to NP-hard optimization problems. One of the promising ways for enabling large-scale phylogeny estimation is through divide-and-conquer: a dataset is divided into overlapping subsets, trees are estimated on the subsets, and then the subset trees are merged together into a tree on the full s
发表于 2025-3-22 15:49:13 | 显示全部楼层
Taxonomic Supertree Construction with , Taxa,st, into a single tree that includes every species found in any input tree. These methods are usually applied to phylogenetic estimates that only have taxonomic labels at their leaves. Taxonomies are another source of information about phylogenetic relationships. They usually convey names for groups
发表于 2025-3-22 19:16:30 | 显示全部楼层
Evolutionary Rate Change and the Transformation from Additive to Ultrametric: Modal Similarity of Osuch as the number of mutations that have accrued between the two endpoints of a branch. Methods to account for the mutational change in terms of an additive tree are generally incompatible with the ultrametric requirement of time-based tree representations because of changes in mutation rate. There
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发表于 2025-3-23 03:31:41 | 显示全部楼层
Genome Rearrangement Problems with Single and Multiple Gene Copies: A Review, single copy of each gene and the only changes in the genome are structural, i.e., reordering of segments. In contrast, numerical changes such as deletions and duplications, which change the number of copies of genes, have been observed in species evolution and prominently in tumorigenesis. Here, we
发表于 2025-3-23 08:47:14 | 显示全部楼层
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