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Titlebook: Bioinformatics Research and Application; 7th International Sy Jianer Chen,Jianxin Wang,Alexander Zelikovsky Conference proceedings 2011 Spr

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The Korteweg—de Vries Equation and Beyond MAST can be misleading, however, since there can be an exponential number of MASTs, and two MASTs for the same tree set do not even necessarily share any leaves. In this paper we introduce the notion of the Kernel Agreement SubTree (KAST), which is the summary of the common substructure in all MAST
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Integrability, Computation and Applicationsgene duplication, loss, and deep coalescence, account more then ever for incongruence between gene trees and the actual species tree. Gene tree reconciliation is addressing this fundamental problem by invoking the minimum number of gene-duplication and losses that reconcile a gene tree with a specie
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M. Boiti,F. Pempinelli,A. Pogrebkoveveloped; candidate pharmacogenomic models are automatically generated from some prototype models constructed from existing literature. The parameters in the model are automatically estimated based on time-course observed gene expression data by data assimilation technique. The candidate simulation
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https://doi.org/10.1007/978-3-319-93833-2sjoint orthology sets of genes, in which each element is orthologous to all other genes (on different genomes) in the same set. Approaches differ as to the nature and timing and relative importance of sequence alignment, synteny block construction, and paralogy resolution in constructing these sets.
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Algorithms to Detect Multiprotein Modularity Conserved during Evolution,sures, demonstrate that Produles attains these goals more comprehensively than previous algorithms, and exhibit certain recurrent anomalies in the performance of previous algorithms that are not detected by previous measures.
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