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Titlebook: Bioconductor Case Studies; Florian Hahne,Wolfgang Huber,Seth Falcon Book 2008 Springer-Verlag New York 2008 Annotation.Bioinformatics.Clus

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Kreativität in der Unterhaltungsproduktion, and it can help to increase the statistical power of analyses by aggregating the signal across groups of related genes. In this chapter, we introduce tools available in the . and . packages for carrying out gene set enrichment analysis.
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Using Graphs for Interactome Data, In this chapter, we explore a curated dataset of protein interactions and perform a statistical analysis of the relationship between protein interaction and coexpression. We also show how to access large-scale protein–protein interaction datasets from the IntAct repository at the EBI.
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Hypergeometric Testing Used for Gene Set Enrichment Analysis, functional relationships among those genes that might help better elucidate the underlying biology. These methods typically rely on existing or predefined sets of genes. In this chapter we show how to carry out Hypergeometric tests to identify potentially interesting gene sets.
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