Titlebook: Bacterial Pangenomics; Methods and Protocol Alessio Mengoni,Marco Galardini,Marco Fondi Book 2015 Springer Science+Business Media New York

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https://doi.org/10.1007/978-3-658-08176-8f data, is the analysis of raw sequence quality and removal (trimming) of low-quality segments while retaining sufficient information for subsequent analyses. Here, we present a series of methods useful for converting and for refinishing one or more sequence files. One of the methods proposed, based

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OT-Mitgliedschaften und OT-Verbändewadays it is an almost routine practice in many molecular biology labs. In this chapter we discuss in depth the various methods to assemble the short sequences (called reads) obtained from a massive sequencing system, using different software and strategies, and how to perform some fundamental quali

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https://doi.org/10.1007/978-3-658-08176-8ncreasing number of bacterial species having more than one strain sequenced, thus facilitating the annotation process. On the other hand, many genomic sequences are now left in the “draft” status, as a series of contigs, mainly for the labor-intensive finishing task. As a result, many genomic analys

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Handbuch Arbeits- und Gesundheitsschutzal for obtaining scientific findings and new knowledge. Thus, bacterial genome annotation has emerged as a key point to investigate in bacteria. Any efficient tool designed specifically to annotate bacterial genomes sequenced with massively parallel technologies has to consider the specific features

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Handbuch Arbeits- und Gesundheitsschutzasingly more genomes from microbes belonging to the same taxonomic unit. Eventually, this led to the concept of ., that is, the entire set of genes present in a group of representatives of the same genus/species, which, in turn, can be divided into ., defined as the set of those genes present in all

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Finanzmärkte und Finanzialisierungoit new usable substances of microbial origin. Computational modeling and in silico simulations are powerful tools in this context since they allow the exploration and a deeper understanding of bacterial metabolic circuits. Many approaches exist to quantitatively simulate chemical reaction fluxes wi

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https://doi.org/10.1007/978-3-658-21704-4day’s biology. Such task is of paramount importance towards the understanding of biotechnologically relevant pathways and possibly for their manipulation. Fundamental prerequisites are the genome-wide reconstruction of metabolic pathways and a comprehensive measurement of cellular phenotypes. Cellul

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