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Titlebook: Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications; B. Sharat Chandra Varma,Kolin Paul,M. Balakrishnan Bo

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FPGA-Based Acceleration of De Novo Genome Assembly,genomes. This method is also used when reference genome is available because the construction is unbiased. The genome assembly involves large amounts of data and string comparison and hence takes significant time to execute. In this chapter, we show achieved speedups over software implementations us
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System-Level Design Space Exploration,ms become more complex, one moves up the abstraction level for design space exploration through simulation. This is essential for managing complexity. Normally, higher abstraction levels imply faster and wider design space exploration but come at the price of lower accuracy. The focus of this chapte
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Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications
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1437-0387 are implementations in other domains besides bioinformatics. This book will prove useful to students, researchers, and practicing engineers alike.978-981-10-9203-9978-981-10-0591-6Series ISSN 1437-0387 Series E-ISSN 2197-6643
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Introduction,wed number of transistors to double every 18 months in accordance to Moore’s law (Moore, Prod. IEEE 86(1):82–85, 1998). This technological advancement has led to design and development of faster and energy-efficient hardware. Availability of faster processors enabled software based solutions to repl
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Is the European Monetary System a DM-Zone?necessary component of any design methodology. It is expected that more HEBs will be embedded into FPGAs and such a methodology will aid in building efficient reconfigurable fabrics. In this chapter, we describe a methodology to design accelerators using FPGAs with custom-designed HEBs.
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