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Titlebook: Algorithms in Bioinformatics; 16th International W Martin‘Frith,Christian Nørgaard Storm Pedersen Conference proceedings 2016 Springer Inte

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Aktuelle Entwicklungen auf nationaler Ebene, stored at a working disk. In a second step, the temporary files are read again, split into .-mers and counted via a hash table approach. In addition, . can optionally use GPUs to accelerate the counting step. For large ., we outperform state-of-the-art open source .-mer counting tools by up to a factor of 4 for large genome data sets.
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Aktuelle Entwicklungen auf nationaler Ebene,formulation. We finally provide theoretical and empirical bounds on the expected growth of the parameter at the center of our FPT and ILP algorithms, assuming a probabilistic model of evolution under wDCJ, which shows that both these algorithms should run reasonably fast in practice.
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An Efficient Branch and Cut Algorithm to Find Frequently Mutated Subnetworks in Cancer,reviously proposed greedy and approximation algorithms. We test our algorithm on real cancer data and show that our approach is viable and allows for the identification of subnetworks containing known cancer genes.
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,: A Fast and Memory-Efficient ,-mer Counter with GPU-Support, stored at a working disk. In a second step, the temporary files are read again, split into .-mers and counted via a hash table approach. In addition, . can optionally use GPUs to accelerate the counting step. For large ., we outperform state-of-the-art open source .-mer counting tools by up to a factor of 4 for large genome data sets.
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Genome Rearrangements on Both Gene Order and Intergenic Regions,formulation. We finally provide theoretical and empirical bounds on the expected growth of the parameter at the center of our FPT and ILP algorithms, assuming a probabilistic model of evolution under wDCJ, which shows that both these algorithms should run reasonably fast in practice.
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Conference proceedings 2016The 25 full papers  together with 2 invited talks presented were carefullyreviewed and selected from 54 submissions..The selected papers cover a wide range of topics from networks, to.phylogenetic studies, sequence and genome analysis, comparative genomics, and mass spectrometry data analysis. .
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