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Titlebook: Using Mass Spectrometry for Biochemical Studies on Enzymatic Domains from Polyketide Synthases; Matthew Jenner Book 2016 Springer Internat

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发表于 2025-3-21 16:18:36 | 显示全部楼层 |阅读模式
书目名称Using Mass Spectrometry for Biochemical Studies on Enzymatic Domains from Polyketide Synthases
编辑Matthew Jenner
视频video
概述Nominated as an Outstanding Ph.D. thesis by the University of Nottingham.Describes novel use of intact MS for the study of enzyme acylation and elongation.Comprehensive and accessible review of trans-
丛书名称Springer Theses
图书封面Titlebook: Using Mass Spectrometry for Biochemical Studies on Enzymatic Domains from Polyketide Synthases;  Matthew Jenner Book 2016 Springer Internat
描述.This thesis reports studies on the substrate specificity of crucial ketosynthase (KS) domains from trans-AT Polyketide Synthases (PKSs). Using a combination of electrospray ionisation-mass spectrometry (ESI-MS) and simple N-acetyl cysteamine (SNAC) substrate mimics, the specificity of a range of KS domains from the bacillaene and psymberin PKSs have been succsessfully studied with regard to the initial acylation step of KS-catalysis..In addition, the ability to alter the substrate tolerance of KS domains by simple point mutations in the active site has been demonstrated. A series of acyl-ACPs have been synthesised using a novel methodology and employed to probe the substrate specificity of both KS domains and the previously uncharcterised acyl hydrolase domain, PedC..KS-catalysed chain elongation reactions have also been conducted and monitored by ESI-MS/MS. All KS domains studied exhibited higher substrate specificity at the elongation step than in the preceeding acylation step. Furthermore, a mechanism of reversible acylation is proposed using the PsyA ACP1-KS1 di-domain. The findings in this thesis provide important insights into mechanisms of KS specificity and show that mutag
出版日期Book 2016
关键词Polyketide Synthases; Mass Spectrometry; Biosynthesis, Enzymes; Ketosynthase; Acyl Hydrolase; Enzymatic D
版次1
doihttps://doi.org/10.1007/978-3-319-32723-5
isbn_softcover978-3-319-81355-4
isbn_ebook978-3-319-32723-5Series ISSN 2190-5053 Series E-ISSN 2190-5061
issn_series 2190-5053
copyrightSpringer International Publishing Switzerland 2016
The information of publication is updating

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发表于 2025-3-21 21:22:22 | 显示全部楼层
,Substrate Specificity of Ketosynthase Domains Part I: β-Branched Acyl Chains,guyen et al., Nat. Biotechnol. 26:225–233, 2008, [.]). The extent of this evolution-based specificity is believed to reach as far as the β-position for each given biosynthetic intermediate, as detailed in section “KS Specificity-Based Assignment of .-AT PKSs”. Compared to textbook colinearity rules,
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Substrate Specificity of Ketosynthase Domains Part II: Amino Acid-Containing Acyl Chains,to accept a glycine-derived intermediate incorporated by the previous NRPS module. KS1 is positioned in a phylogenetic clade with other amino-acid accepting KS domains, of which the majority accept a glycine intermediate.
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Substrate Specificity of Ketosynthase Domains Part III: Elongation-Based Substrate Specificity, Chap. ., which is able to accept a β-Me branched acyl unit, is also shown to elongate this bulky acyl group in addition to 5- and 6-membered rings, demonstrating scope for engineering new polyketides.
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,Substrate Specificity of Ketosynthase Domains Part I: β-Branched Acyl Chains,om the psymberin PKS are reported. Using the data from these assays, in conjunction with homology modelling, the molecular rules dictating the ability of KS domains to accept carbon based β-branched substrates is revealed.
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