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Titlebook: Systems Chemical Biology; Methods and Protocol Slava Ziegler,Herbert Waldmann Book 2019 Springer Science+Business Media, LLC, part of Sprin

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书目名称Systems Chemical Biology
副标题Methods and Protocol
编辑Slava Ziegler,Herbert Waldmann
视频video
概述Includes cutting-edge techniques.Provides step-by-step detail essential for reproducible results.Contains key notes and advice from the experts
丛书名称Methods in Molecular Biology
图书封面Titlebook: Systems Chemical Biology; Methods and Protocol Slava Ziegler,Herbert Waldmann Book 2019 Springer Science+Business Media, LLC, part of Sprin
描述.This volume explores the latest available wet-lab techniques and computational methods to study in-cell small-molecule behavior and interactions with their targets. The chapters in this book discuss topics such as disease-relevant models for chemical biology studies, target engagement using cellular thermal shift assay or bioluminescence resonance energy transfer; visualization of bio-active small molecules Raman microscopy; (phospho-)proteomics and transcriptomics for mode-of-action studies, CRISPR/Cas9-based chemogenomic profiling in mammalian cells; predicting drug interactions using computational approaches; comparison of compound-induced profiles using high-content imaging or cancer cell line panels and web-based tools for polypharmacology prediction. Written in the highly successful .Methods in Molecular Biology. series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.. . Cutting-edge and thorough, .Systems Chemical Biology: Methods and Protocols .is a valuable resource for novice or expert scientist
出版日期Book 2019
关键词Small molecules; Cellular networks; Computational strategies; Cheminformatic approaches; Drug repurposin
版次1
doihttps://doi.org/10.1007/978-1-4939-8891-4
isbn_ebook978-1-4939-8891-4Series ISSN 1064-3745 Series E-ISSN 1940-6029
issn_series 1064-3745
copyrightSpringer Science+Business Media, LLC, part of Springer Nature 2019
The information of publication is updating

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Quantitative, Real-Time Measurements of Intracellular Target Engagement Using Energy Transfer,010). Although various robust biochemical approaches exist to measure these binding characteristics, analysis of compound binding with isolated targets may not accurately reflect engagement in the milieu of living cells. To realize the influence of cellular context, methods are needed that are capab
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Target Engagement of Small Molecules: Thermal Profiling Approaches on Different Levels,f chemical biology. Many different techniques for target identification and engagement are developed, but none of them is generic. Here we describe one of these techniques—the .llular .hermal .hift .ssay (CETSA). The assay works without any labeling of proteins or small molecules, which allows the i
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Visualizing Bioactive Small Molecules by Alkyne Tagging and Slit-Scanning Raman Microscopy,rows light on their molecular mechanisms of action and specificity. Many studies in this area have employed fluorescence imaging, using molecules of interest labeled with fluorescent dyes. However, modification with a bulky fluorophore may significantly alter the properties, including bioactivity, o
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The Cell Painting Assay as a Screening Tool for the Discovery of Bioactivities in New Chemical Matteening tool for the discovery of new biological activities. The cell painting assay stains various cellular features using six different dyes in one well. By automated image analysis, hundreds of parameters are calculated from the images which deliver a phenotypic profile of the cell. It has been sh
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Proteomic Profiling for Target Identification of Biologically Active Small Molecules Using 2D DIGE, treated with bioactive small molecules. Using such data, a variety of profiling methods have been established for target identification of such bioactive compounds. In this chapter, we describe a proteomic profiling system, ChemProteoBase, based on proteome analysis using two-dimensional difference
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Exome Sequencing of Drug-Resistant Clones for Target Identification,ll molecules has been challenging. The gold standard for target identification requires the discovery of mutations in the target protein that block the effects of small molecules in vitro as well as in vivo. Here we describe the procedures for isolating drug resistant clones using the colorectal can
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