Titlebook: Supercomputing; Third Russian Superc Vladimir Voevodin,Sergey Sobolev Conference proceedings 2017 Springer International Publishing AG 2017

Left-Atrium

Conference proceedings 2017 41 revised full papers and one revised short paper presented were carefully reviewed and selected from 120 submissions. The papers are organized in topical sections on parallel algorithms; supercomputer simulation; high performance architectures, tools and technologies..

Thrombolysis

Dynamic Optimization of Linear Solver Parameters in Mathematical Modelling of Unsteady Processesidered algorithms for dynamic selection of linear solver parameters provide a more efficient solution than any prescribed set of parameters. The results of numerical experiments on the INM RAS cluster are presented.

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Tensor Train Global Optimization: Application to Docking in the Configuration Space with a Large Numd. It is shown that mobility of the protein atoms improves docking positioning accuracy. The SOL-P program is able to perform docking of a flexible ligand into the active site of the target protein with several dozen of protein moveable atoms – up to 157 degrees of freedom.

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Simulation of Seismic Waves Propagation in Multiscale Mediag MPI through nonblocking iSend/iReceive commands. The data exchange between the two groups is done simultaneously by coupling the coarse and fine grids..The results of a numerical simulation of a carbonate reservoir are presented and discussed.

hallow

Means for Fast Performance of the Distributed Associative Operations in Supercomputerstions are also included. The operations for analog-digital counting are proposed for quick counting the number of records in distributed big data. The structure of the connections between devices can be completely changed in comparable time to the execution time of the processor command.