Titlebook: Statistical Population Genomics; Julien Y. Dutheil Book‘‘‘‘‘‘‘‘ 2020 The Editor(s) (if applicable) and The Author(s) 2020 VCFTools.MafFilt

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: Inferring the Distribution of Fitness Effects and Properties of Beneficial Mutations from Polymorpest specified through a distribution of fitness effects (DFE) that spans deleterious, neutral, and beneficial mutations. As such, the DFE is key to several aspects of the evolution of a population, and particularly the rate of adaptive molecular evolution (.). Inference of DFE from patterns of polym

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Ancestral Population Genomics with Jocx, a Coalescent Hidden Markov Modeln in rates of coalescence event as we trace genetic lineages back in time. Fewer and fewer lineages will remain, however, so there is a limit to how far back we can explore. Without recombination, we would not be able to explore ancient speciation events because of this—any meaningful species concep

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Population Genomics of Transitions to Selfing in Brassicaceae Model Systemsanisms, such as molecular self-incompatibility (SI) systems. The maintenance of such systems over long evolutionary timescales suggests that outcrossing is favorable over a broad range of conditions. Conversely, SI has repeatedly been lost, often in association with transitions to self-fertilization

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Genomics of Long- and Short-Term Adaptation in Maize and Teosinteshe globe. And work over the last decade has begun to highlight the role of the wild relatives of maize—the teosintes . ssp. . and ssp. .—as excellent models for dissecting long-term local adaptation..Although human-driven selection associated with maize domestication has been extensively studied, th

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