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Titlebook: Research in Computational Molecular Biology; 11th Annunal Interna Terry Speed,Haiyan Huang Conference proceedings 2007 Springer-Verlag Berl

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Network Legos: Building Blocks of Cellular Wiring Diagrams,anisms. These multi-modal universal networks capture a static view of cellular state. An important challenge in systems biology is obtaining a dynamic perspective on these networks by integrating them with gene expression measurements taken under multiple conditions..We present a top-down computatio
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An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and , Gene Perturbation Experi special attention lately. To have a better understanding of these networks it is necessary to capture their dynamical properties, by computing its steady states. Various methods have been proposed to compute steady states but almost all of them suffer from the state space explosion problem with the
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Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking,otifs – network-centric subgraph enumeration and sampling – have been limited to motifs of 6 to 8 nodes, revealing only the smallest network components. New methods are necessary to identify larger network sub-structures and functional motifs..Here we present a novel algorithm for discovering large
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