Titlebook: Natural Computing; 2nd International Wo Y. Suzuki,M. Hagiya,A. Adamatzky Conference proceedings 2009 Springer-Verlag Tokyo 2009 Alignment.A

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An Efficient Multiple Alignment Method for RNA Secondary Structures Including Pseudoknotsthem. Tree adjoining grammars have proved to be promising for this problem but the question of how to make TAG-based applications practical enough to analyze RNAs of thousands nucleotides remains open. This paper addresses this problem. It makes use of biological properties of pseudoknots, the . and

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Asymmetric Interaction in Non-equilibrium Dissipative System towards Dynamics for Biological Systemon. A minimal model formulated with Newtonian equation of particles in such a system is presented and analyzed mathematically and numerically. Through the investigations of models, we show general properties in such systems.

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Design and Numerical Analysis of RNA Oscillatorfor nanotechnology. Here, we propose an oscillator as a nanosystem to control the nanomachines. It was modeled after a circadian rhythm in life systems and utilized DNA/RNA and their molecular reactions. The molecular reactions were composed of nucleic-acid hybridization, RNA transcription, DNA exte

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