Titlebook: Mathematics of DNA Structure, Function and Interactions; Craig John Benham,Stephen Harvey,David Swigon Conference proceedings 2009 Springe

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978-1-4614-2452-9Springer-Verlag New York 2009

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https://doi.org/10.1007/978-1-4419-0670-0DNA; Function; Interactions; Mathematics; Regulation; Structure; linear optimization; statistics; Systems Bi

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Perspectives On DNA Looping,ediated DNA looping as a mechanism of tran-scriptional regulation. Indeed, such topological change in DNA is known to repress and/or activate many prokaryotic and viral genes [1–4] and is believed to mediate interaction between promoters and enhancers as well as insulate them in eukaryotes [5–9].

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The IMA Volumes in Mathematics and its Applicationshttp://image.papertrans.cn/m/image/626931.jpg

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Topological Analysis of DNA-Protein Complexes,A tangle consists of strings properly embedded in a 3-dimensional ball. Tangles have been used to model protein-bound DNA. The protein is represented by the 3D ball and the protein-bound DNA is represented by the strings embedded in the 3D ball. We review tangle analysis of protein-DNA complexes involving three or four segments of DNA.

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