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Titlebook: High-Performance Algorithms for Mass Spectrometry-Based Omics; Fahad Saeed,Muhammad Haseeb Book 2022 The Editor(s) (if applicable) and The

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书目名称High-Performance Algorithms for Mass Spectrometry-Based Omics
编辑Fahad Saeed,Muhammad Haseeb
视频videohttp://file.papertrans.cn/427/426640/426640.mp4
概述Numerous, advanced high-performance computing techniques and algorithms useful for omics practitioners.Suitable for both learning at undergraduate and graduate level as well as professional level.Ther
丛书名称Computational Biology
图书封面Titlebook: High-Performance Algorithms for Mass Spectrometry-Based Omics;  Fahad Saeed,Muhammad Haseeb Book 2022 The Editor(s) (if applicable) and The
描述.To date, processing of high-throughput Mass Spectrometry (MS) data is accomplished using serial algorithms. Developing new methods to process MS data is an active area of research but there is no single strategy that focuses on scalability of MS based methods. .. ..Mass spectrometry is a diverse and versatile technology for high-throughput functional characterization of proteins, small molecules and metabolites in complex biological mixtures. In the recent years the technology has rapidly evolved and is now capable of generating increasingly large (multiple tera-bytes per experiment) and complex (multiple species/microbiome/high-dimensional) data sets. This rapid advance in MS instrumentation  must  be matched by equally fast and rapid evolution of scalable methods developed for analysis of these complex data sets. Ideally, the new methods should leverage the rich heterogeneous computational resources available in a ubiquitous fashion in the form of  multicore,  manycore,  CPU-GPU, CPU-FPGA, and IntelPhi architectures. .. ..The absence of these high-performance computing algorithms now hinders scientific advancements for mass spectrometry research. In this book we illustrate the n
出版日期Book 2022
关键词High Performance Computing; Mass Spectrometry; Big Data; Proteomics; Protogenomics
版次1
doihttps://doi.org/10.1007/978-3-031-01960-9
isbn_softcover978-3-031-01962-3
isbn_ebook978-3-031-01960-9Series ISSN 1568-2684 Series E-ISSN 2662-2432
issn_series 1568-2684
copyrightThe Editor(s) (if applicable) and The Author(s), under exclusive license to Springer Nature Switzerl
The information of publication is updating

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High-Performance Computing Strategy Using Distributed-Memory Supercomputers,ta [.]. In this technique, the experimental spectral data are compared against a protein sequence database through various search algorithms in order to assign the correct peptide sequence to each experimental spectrum [.]. Since the experimental spectra data (histogram-like data) and the peptide se
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A Easy to Use Generalized Template to Support Development of GPU Algorithms,techniques. These instruments can produce massive amounts of data that needs to be processed in a scalable fashion to ensure that we can make sense of these data sets from various sources [., .]. As expected, Mass Spectrometry (MS) based omics is essential for precision medicine, cancer research, an
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Computational CPU-GPU Template for Pre-processing of Floating-Point MS Data,o make data pre- and post-processing decisions [.]. Sorting, and searching of data for an array of number is one of the oldest problems in computer science. There has been significant effort in developing algorithms that can sort very large array [.].
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Re-configurable Hardware for Computational Proteomics,he implementation of application specific integrated chips (ASIC). Even though FPGAs ran at a clock speed much slower than that of an ASIC, they provided an attractive solution to emulate the design logic and verify the functional and timing performance at the early stages of the design process.
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since 1990. Swarms were found in the northern Aegean Sea, mainly near coastal areas, but at a lower abundance (max 150 ind. m.) than in the Black Sea. It has been hypothesized that . was introduced to the Aegean Sea by Black Sea water, but its presence in Saronikos Gulf and Elefsis Bay, located in t
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Fahad Saeed,Muhammad Haseeband Caspian Seas by the American Ctenophore, Mnemiopsis leidyi Agassiz: a multidisciplinary perspective and a comparison with other aquatic invasions”, held on 24 - 26 June 2002 in Baku (Azerbaijan). The meeting was ?nanced by the NATO Division for Scienti?c and Environmental Affairs (Brussels); sub
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