Titlebook: Experimental Algorithms; 9th International Sy Paola Festa Conference proceedings 2010 Springer-Verlag Berlin Heidelberg 2010 ARC.algorithm

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Maximum Cliques in Protein Structure Comparisonructure comparison methods can be modeled as maximum clique problems in specific .-partite graphs, referred here as alignment graphs. In this paper, we propose a new protein structure comparison method based on internal distances (DAST), which main characteristic is that it generates alignments havi

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Exact Bipartite Crossing Minimization under Tree Constraintse. The task is to draw a tanglegram with a minimum number of tangle crossings while making sure that the trees are drawn crossing-free. This problem has relevant applications in computational biology, e.g., for the comparison of phylogenetic trees. Most existing approaches are only applicable for bi

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