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Titlebook: Evolutionary Genomics; Statistical and Comp Maria Anisimova Book‘‘‘‘‘‘‘‘ 2019Latest edition The Editor(s) (if applicable) and The Author(s)

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The Methodology Behind Network Thinking: Graphs to Analyze Microbial Complexity and Evolution bioinformatic analyses. Network-based methods are increasingly used to complement phylogenetic analysis in studies in molecular evolution, including comparative genomics, classification, and ecological studies. Using network methods, the vertical and horizontal relationships between all genes or ge
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Genome Evolution in Outcrossing vs. Selfing vs. Asexual Speciescause they affect many population genetic processes and thus genome evolution. We review theoretical predictions and empirical evidence about molecular evolutionary processes under three distinct breeding systems—outcrossing, selfing, and asexuality. Breeding systems may have a profound impact on ge
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Looking for Darwin in Genomic Sequences: Validity and Success Depends on the Relationship Between Mocit goal of detecting the signature of positive Darwinian selection. However, the validity and success of CSMs used in conjunction with the maximum likelihood (ML) framework is sometimes challenged with claims that the approach might too often support false conclusions. In this chapter, we use a cas
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Evolution of Viral Genomes: Interplay Between Selection, Recombination, and Other Forcesith their typically short and largely coding genomes, experience strong and diverse selective forces, sometimes acting on timescales that can be directly measured. These selection pressures emerge from an antagonistic interplay between rapidly changing fitness requirements (immune and antiviral resp
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https://doi.org/10.1007/978-1-4939-9074-0Genome biology; Genotype and phenotype; Probability and statistics; Sequence homology; Molecular evoluti
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Oliver Keszocze,Robert Wille,Rolf Drechslerhe genome can be viewed as both a structural and an informational unit of biological diversity and explicitly define our intended meaning of genetic information. A brief overview of the characteristic features of bacterial, archaeal, and eukaryotic cell types and viruses sets the stage for a review
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