Titlebook: Eukaryotic Genomic Databases; Methods and Protocol Martin Kollmar Book 2018 Springer Science+Business Media, LLC, part of Springer Nature 2

Trypsin

Bovine Genome Database: Tools for Mining the , Genome, tools. BovineMine is a tool within BGD that integrates BGD data, including the genome, genes, precomputed gene expression levels and variant consequences, with external data sources that include quantitative trait loci (QTL), orthologues, Gene Ontology, gene interactions, and pathways. BovineMine e

伦理学

Navigating Xenbase: An Integrated , Genomics and Gene Expression Database,ts a variety of content including current and archived genomes for both . and ., bioinformatic tools for comparative genetic analyses including BLAST and GBrowse, annotated . literature, and catalogs of reagents including antibodies, ORFeome clones, morpholinos, and transgenic lines. Xenbase compile

担心

Using ZFIN: Data Types, Organization, and Retrieval,community. Some of the earliest records in ZFIN were for people and laboratories. Since that time, services and data types provided by ZFIN have grown considerably. Today, ZFIN provides the official nomenclature for zebrafish genes, mutants, and transgenics and curates many data types including gene

易发怒

EchinoBase: Tools for Echinoderm Genome Analyses,hinoBase (.) is an echinoderm-specific genome database and web information system that provides a platform for the interrogation and exploration of echinoderm genomic data. This chapter outlines the datasets available on EchinoBase; from assembled genomes and genome annotations, to spatial and quant

Essential

A Multi-Omics Database for Parasitic Nematodes and Trematodes,has evolved to become the moniker for a collection of databases: . and .. These databases host information for 73 nematode (roundworms) and 17 trematode (flatworms) species and serve as backbone for a number of tools that allow users to query slices of the data for multifactorial combinations of spe

MUTE

Using WormBase: A Genome Biology Resource for , and Related Nematodes,matode genome sequences are becoming available and as richer data sets are published, WormBase strives to maintain updated information, displays, and services to facilitate efficient access to and understanding of the knowledge generated by the published nematode genetics literature. This chapter ai

separate

Using WormBase ParaSite: An Integrated Platform for Exploring Helminth Genomic Data, for over 100 helminth species, adding value by way of consistent functional annotation, gene comparative analysis and gene expression analysis. We provide several ways of exploring the data including a choice of genome browsers, genome and gene summary pages, text and sequence searching, a query wi

全等

Using FlyBase to Find Functionally Related , Genes,Traditionally, FlyBase data have been organized and presented at a gene-by-gene level, which remains a useful perspective when the object of interest is a specific gene or gene product. However, in the modern era of a fully sequenced genome and an increasingly characterized proteome, it is often des

难解

Hymenoptera Genome Database: Using HymenopteraMine to Enhance Genomic Studies of Hymenopteran InsecGD provides genome browsers with manual annotation tools (JBrowse/Apollo), BLAST, bulk data download, and a data mining warehouse (HymenopteraMine). This chapter focuses on the use of HymenopteraMine to create annotation data sets that can be exported for use in downstream analyses. HymenopteraMine

restrain

Navigating the i5k Workspace@NAL: A Resource for Arthropod Genomes, and counting, the i5k Workspace strives to facilitate public data access, visualization, and community curation across arthropod species. Any researcher with an arthropod genome project who would like to take advantage of the i5k Workspace facilities is encouraged to submit their data. In this chap