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Titlebook: Data Mining for Systems Biology; Methods and Protocol Hiroshi Mamitsuka Book 2018Latest edition Springer Science+Business Media, LLC, part

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Jeffrey R. Gerlach,James B. Oldroydto solve the challenge in the citation side. MeSHLabeler achieved the first place in both BioASQ2 and BioASQ3, and DeepMeSH achieved the first place in both BioASQ4 and BioASQ5 challenges. DeepMeSH is available at ..
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Commercial Banking in Transitionlogical characteristics, we propose to represent them with metagraphs. Compared to the traditional network motif or subgraph, a metagraph can capture the topological arrangements through not only the protein-protein interactions but also protein-keyword associations. We feed those novel metagraph re
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Computing and Visualizing Gene Function Similarity and Coherence with NaviGO,alculates protein GO functional enrichment, while the “Protein Set” tab calculates functional association between proteins. The NaviGO source code can be also downloaded and used locally or integrated into other software pipelines.
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Analysis of Fluxomic Experiments with Principal Metabolic Flux Mode Analysis,egularized optimization framework. In short, the method incorporates a variance maximization objective form PCA coupled with a stoichiometric regularizer, which penalizes projections that are far from any flux modes of the network. For interpretability, we also discuss a sparse variant of PMFA that
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